PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0050s0102.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 173aa    MW: 19370.9 Da    PI: 9.2591
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0050s0102.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.3e-18754253
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                         +++GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ +
  Kalax.0050s0102.1.p  7 RFRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLM 54
                         69******9.**********8.....334*********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.42E-33666No hitNo description
PfamPF008477.3E-11755IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-20765IPR016177DNA-binding domain
SMARTSM003802.9E-41770IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-34765IPR001471AP2/ERF domain
PROSITE profilePS5103220.653764IPR001471AP2/ERF domain
PRINTSPR003678.6E-11819IPR001471AP2/ERF domain
PRINTSPR003678.6E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MVRPQQRFRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGTRAR  60
TNFPHNPNAS QSSSSKLLSA NLTAKLHKCY MASLQLTTAK QAAKPPSKQH AASTVTSVPD  120
IKFETWSPDS WSSSSSWSPE RSPAKMAMLE EHHIEQMIEE LLDYGSIELC SG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-18871670ATERF1
3gcc_A6e-18871670ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008377674.17e-79PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW59e-73ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLD5L1057e-79D5L105_MALDO; AP2 domain class transcription factor
STRINGPOPTR_0018s02280.14e-75(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.13e-49ERF family protein